- Episode 1 The Bad Batch - Rex, Cody, and Clone Force 99 (an unorthodox, elite squad also known as the Bad Batch), look to recover the Republic's strategy algorithm from Admiral Trench, but a haunting truth awaits.
- Episode 2 A Distant Echo - Believing that MIA soldier Echo may still be alive, Rex's mission becomes doubly important. Alongside Bad Batch and Anakin Skywalker, the clone captain launches a dangerous covert rescue.
- Episode 3 On the Wings of Keeradaks - With Echo recovered, Rex, Bad Batch and Anakin Skywalker look to fight their way out of a Separatist base.
- Episode 4 Unfinished Business - The Republic plans a daring final strike against Wat Tambor and Admiral Trench, once again bringing together Rex, Echo, Anakin Skywalker, and the elite Bad Batch squad.